Loop J5_1JZX

3D structure

PDB id: 1JZX (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU
Length: 44 nucleotides
Bulged bases: 1JZX|1|A|A|2045, 1JZX|1|A|A|2427, 1JZX|1|A|U|2588, 1JZX|1|A|C|2589, 1JZX|1|A|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1JZX|1|A|A|2037
1JZX|1|A|C|2038
1JZX|1|A|G|2039
1JZX|1|A|A|2040
1JZX|1|A|A|2041
1JZX|1|A|A|2042
1JZX|1|A|A|2043
1JZX|1|A|G|2044
1JZX|1|A|A|2045
1JZX|1|A|C|2046
1JZX|1|A|C|2047
*
1JZX|1|A|G|2425
1JZX|1|A|G|2426
1JZX|1|A|A|2427
1JZX|1|A|U|2428
1JZX|1|A|A|2429
1JZX|1|A|A|2430
1JZX|1|A|C|2431
1JZX|1|A|A|2432
*
1JZX|1|A|U|2479
1JZX|1|A|C|2480
1JZX|1|A|G|2481
1JZX|1|A|A|2482
1JZX|1|A|U|2483
1JZX|1|A|G|2484
1JZX|1|A|U|2485
1JZX|1|A|C|2486
*
1JZX|1|A|G|2561
1JZX|1|A|G|2562
1JZX|1|A|U|2563
1JZX|1|A|U|2564
1JZX|1|A|C|2565
1JZX|1|A|A|2566
1JZX|1|A|G|2567
*
1JZX|1|A|C|2585
1JZX|1|A|G|2586
1JZX|1|A|G|2587
1JZX|1|A|U|2588
1JZX|1|A|C|2589
1JZX|1|A|U|2590
1JZX|1|A|C|2591
1JZX|1|A|U|2592
1JZX|1|A|A|2593
1JZX|1|A|U|2594

Current chains

Chain A: 23S rRNA

Nearby chains

Chain K: Ribosomal Protein L4
Chain L: Ribosomal Protein L22
Chain M: Ribosomal Protein L32

J5_1JZX_005