J5_1JZZ_003

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UAAGGAACUUUGCAAUCUCAC*GUC*GC*GUGAAUAGG*CGCUGUCUCA

Length

45 nucleotides

Bulged bases

1JZZ|1|A|G|1749, 1JZZ|1|A|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZZ|1|A|U|1680
1JZZ|1|A|A|1681
1JZZ|1|A|A|1682
1JZZ|1|A|G|1683
1JZZ|1|A|G|1684
1JZZ|1|A|A|1685
1JZZ|1|A|A|1686
1JZZ|1|A|C|1687
1JZZ|1|A|U|1688
1JZZ|1|A|U|1689
1JZZ|1|A|U|1690
1JZZ|1|A|G|1691
1JZZ|1|A|C|1692
1JZZ|1|A|A|1693
1JZZ|1|A|A|1694
1JZZ|1|A|U|1695
1JZZ|1|A|C|1696
1JZZ|1|A|U|1697
1JZZ|1|A|C|1698
1JZZ|1|A|A|1699
1JZZ|1|A|C|1700
*
1JZZ|1|A|G|1722
1JZZ|1|A|U|1723
1JZZ|1|A|C|1724
*
1JZZ|1|A|G|1742
1JZZ|1|A|C|1743
*
1JZZ|1|A|G|1747
1JZZ|1|A|U|1748
1JZZ|1|A|G|1749
1JZZ|1|A|A|1750
1JZZ|1|A|A|1751
1JZZ|1|A|U|1752
1JZZ|1|A|A|1753
1JZZ|1|A|G|1754
1JZZ|1|A|G|1755
*
1JZZ|1|A|C|1971
1JZZ|1|A|G|1972
1JZZ|1|A|C|1973
1JZZ|1|A|U|1974
1JZZ|1|A|G|1975
1JZZ|1|A|U|1976
1JZZ|1|A|C|1977
1JZZ|1|A|U|1978
1JZZ|1|A|C|1979
1JZZ|1|A|A|1980

Current chains

Chain A

23S rRNA

Nearby chains