J5_1K01_002
3D structure
- PDB id
- 1K01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGGAUG
- Length
- 23 nucleotides
- Bulged bases
- 1K01|1|A|U|1268
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1K01_002 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1616
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
1K01|1|A|C|593
1K01|1|A|G|594
1K01|1|A|A|595
1K01|1|A|C|596
1K01|1|A|U|597
1K01|1|A|U|598
*
1K01|1|A|A|681
1K01|1|A|G|682
1K01|1|A|A|683
1K01|1|A|C|684
*
1K01|1|A|G|822
1K01|1|A|U|823
1K01|1|A|U|824
1K01|1|A|C|825
*
1K01|1|A|G|1209
1K01|1|A|C|1210
*
1K01|1|A|G|1263
1K01|1|A|C|1264
1K01|1|A|G|1265
1K01|1|A|G|1266
1K01|1|A|A|1267
1K01|1|A|U|1268
1K01|1|A|G|1269
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain K
- Ribosomal Protein L4
Coloring options: