J5_1K01_004

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUUUGCAAUCUCAC*GUC*GC*GUGAAUAGG*CGCUGU

Length

35 nucleotides

Bulged bases

1K01|1|A|G|1749, 1K01|1|A|G|1754, 1K01|1|A|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|A|1686
1K01|1|A|C|1687
1K01|1|A|U|1688
1K01|1|A|U|1689
1K01|1|A|U|1690
1K01|1|A|G|1691
1K01|1|A|C|1692
1K01|1|A|A|1693
1K01|1|A|A|1694
1K01|1|A|U|1695
1K01|1|A|C|1696
1K01|1|A|U|1697
1K01|1|A|C|1698
1K01|1|A|A|1699
1K01|1|A|C|1700
*
1K01|1|A|G|1722
1K01|1|A|U|1723
1K01|1|A|C|1724
*
1K01|1|A|G|1742
1K01|1|A|C|1743
*
1K01|1|A|G|1747
1K01|1|A|U|1748
1K01|1|A|G|1749
1K01|1|A|A|1750
1K01|1|A|A|1751
1K01|1|A|U|1752
1K01|1|A|A|1753
1K01|1|A|G|1754
1K01|1|A|G|1755
*
1K01|1|A|C|1971
1K01|1|A|G|1972
1K01|1|A|C|1973
1K01|1|A|U|1974
1K01|1|A|G|1975
1K01|1|A|U|1976

Current chains

Chain A

23S rRNA

Nearby chains