Loop J5_1K01

3D structure

PDB id: 1K01 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACA*UCGAUGUCG*UGGGUUCAG*CGGUCUCUAU
Length: 47 nucleotides
Bulged bases: 1K01|1|A|A|2045, 1K01|1|A|A|2427, 1K01|1|A|U|2483, 1K01|1|A|G|2484, 1K01|1|A|U|2588, 1K01|1|A|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1K01|1|A|A|2037
1K01|1|A|C|2038
1K01|1|A|G|2039
1K01|1|A|A|2040
1K01|1|A|A|2041
1K01|1|A|A|2042
1K01|1|A|A|2043
1K01|1|A|G|2044
1K01|1|A|A|2045
1K01|1|A|C|2046
1K01|1|A|C|2047
*
1K01|1|A|G|2425
1K01|1|A|G|2426
1K01|1|A|A|2427
1K01|1|A|U|2428
1K01|1|A|A|2429
1K01|1|A|A|2430
1K01|1|A|C|2431
1K01|1|A|A|2432
*
1K01|1|A|U|2479
1K01|1|A|C|2480
1K01|1|A|G|2481
1K01|1|A|A|2482
1K01|1|A|U|2483
1K01|1|A|G|2484
1K01|1|A|U|2485
1K01|1|A|C|2486
1K01|1|A|G|2487
*
1K01|1|A|U|2559
1K01|1|A|G|2560
1K01|1|A|G|2561
1K01|1|A|G|2562
1K01|1|A|U|2563
1K01|1|A|U|2564
1K01|1|A|C|2565
1K01|1|A|A|2566
1K01|1|A|G|2567
*
1K01|1|A|C|2585
1K01|1|A|G|2586
1K01|1|A|G|2587
1K01|1|A|U|2588
1K01|1|A|C|2589
1K01|1|A|U|2590
1K01|1|A|C|2591
1K01|1|A|U|2592
1K01|1|A|A|2593
1K01|1|A|U|2594

Current chains

Chain A: 23S rRNA

Nearby chains

Chain K: Ribosomal Protein L4
Chain L: Ribosomal Protein L22
Chain M: Ribosomal Protein L32

J5_1K01_005