J5_1K8A_007
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGACCC*GGGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG
- Length
- 40 nucleotides
- Bulged bases
- 1K8A|1|A|A|2103, 1K8A|1|A|A|2483, 1K8A|1|A|U|2539, 1K8A|1|A|C|2644, 1K8A|1|A|U|2645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1K8A|1|A|C|2098
1K8A|1|A|G|2099
1K8A|1|A|A|2100
1K8A|1|A|A|2101
1K8A|1|A|G|2102
1K8A|1|A|A|2103
1K8A|1|A|C|2104
1K8A|1|A|C|2105
1K8A|1|A|C|2106
*
1K8A|1|A|G|2480
1K8A|1|A|G|2481
1K8A|1|A|G|2482
1K8A|1|A|A|2483
1K8A|1|A|U|2484
1K8A|1|A|A|2485
1K8A|1|A|A|2486
1K8A|1|A|C|2487
1K8A|1|A|A|2488
1K8A|1|A|G|2489
*
1K8A|1|A|C|2533
1K8A|1|A|C|2534
1K8A|1|A|U|2535
1K8A|1|A|C|2536
1K8A|1|A|G|2537
1K8A|1|A|A|2538
1K8A|1|A|U|2539
1K8A|1|A|G|2540
1K8A|1|A|U|2541
*
1K8A|1|A|G|2618
1K8A|1|A|U|2619
1K8A|1|A|U|2620
1K8A|1|A|U|2621
1K8A|1|A|A|2622
1K8A|1|A|G|2623
*
1K8A|1|A|C|2641
1K8A|1|A|G|2642
1K8A|1|A|G|2643
1K8A|1|A|C|2644
1K8A|1|A|U|2645
1K8A|1|A|G|2646
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain J
- RIBOSOMAL PROTEIN L10E
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain S
- RIBOSOMAL PROTEIN L22
Coloring options: