J5_1K9M_007

3D structure

PDB id

1K9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

1K9M|1|A|A|2103, 1K9M|1|A|A|2483, 1K9M|1|A|U|2484, 1K9M|1|A|U|2539, 1K9M|1|A|C|2644, 1K9M|1|A|U|2645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K9M|1|A|C|2098
1K9M|1|A|G|2099
1K9M|1|A|A|2100
1K9M|1|A|A|2101
1K9M|1|A|G|2102
1K9M|1|A|A|2103
1K9M|1|A|C|2104
1K9M|1|A|C|2105
*
1K9M|1|A|G|2481
1K9M|1|A|G|2482
1K9M|1|A|A|2483
1K9M|1|A|U|2484
1K9M|1|A|A|2485
1K9M|1|A|A|2486
1K9M|1|A|C|2487
1K9M|1|A|A|2488
1K9M|1|A|G|2489
*
1K9M|1|A|C|2533
1K9M|1|A|C|2534
1K9M|1|A|U|2535
1K9M|1|A|C|2536
1K9M|1|A|G|2537
1K9M|1|A|A|2538
1K9M|1|A|U|2539
1K9M|1|A|G|2540
1K9M|1|A|U|2541
*
1K9M|1|A|G|2618
1K9M|1|A|U|2619
1K9M|1|A|U|2620
1K9M|1|A|U|2621
1K9M|1|A|A|2622
1K9M|1|A|G|2623
*
1K9M|1|A|C|2641
1K9M|1|A|G|2642
1K9M|1|A|G|2643
1K9M|1|A|C|2644
1K9M|1|A|U|2645
1K9M|1|A|G|2646

Current chains

Chain A

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L2

Chain D

RIBOSOMAL PROTEIN L3

Chain E

RIBOSOMAL PROTEIN L4

Chain J

RIBOSOMAL PROTEIN L10E

Chain M

RIBOSOMAL PROTEIN L15

Chain S

RIBOSOMAL PROTEIN L22