J5_1KD1_007
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG
- Length
- 38 nucleotides
- Bulged bases
- 1KD1|1|A|A|2103, 1KD1|1|A|A|2483, 1KD1|1|A|C|2644, 1KD1|1|A|U|2645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1KD1|1|A|C|2098
1KD1|1|A|G|2099
1KD1|1|A|A|2100
1KD1|1|A|A|2101
1KD1|1|A|G|2102
1KD1|1|A|A|2103
1KD1|1|A|C|2104
1KD1|1|A|C|2105
*
1KD1|1|A|G|2481
1KD1|1|A|G|2482
1KD1|1|A|A|2483
1KD1|1|A|U|2484
1KD1|1|A|A|2485
1KD1|1|A|A|2486
1KD1|1|A|C|2487
1KD1|1|A|A|2488
1KD1|1|A|G|2489
*
1KD1|1|A|C|2533
1KD1|1|A|C|2534
1KD1|1|A|U|2535
1KD1|1|A|C|2536
1KD1|1|A|G|2537
1KD1|1|A|A|2538
1KD1|1|A|U|2539
1KD1|1|A|G|2540
1KD1|1|A|U|2541
*
1KD1|1|A|G|2618
1KD1|1|A|U|2619
1KD1|1|A|U|2620
1KD1|1|A|U|2621
1KD1|1|A|A|2622
1KD1|1|A|G|2623
*
1KD1|1|A|C|2641
1KD1|1|A|G|2642
1KD1|1|A|G|2643
1KD1|1|A|C|2644
1KD1|1|A|U|2645
1KD1|1|A|G|2646
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain S
- RIBOSOMAL PROTEIN L22
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