J5_1KQS_007

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

1KQS|1|0|A|2103, 1KQS|1|0|A|2483, 1KQS|1|0|C|2644, 1KQS|1|0|U|2645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1KQS|1|0|C|2098
1KQS|1|0|G|2099
1KQS|1|0|A|2100
1KQS|1|0|A|2101
1KQS|1|0|G|2102
1KQS|1|0|A|2103
1KQS|1|0|C|2104
1KQS|1|0|C|2105
*
1KQS|1|0|G|2481
1KQS|1|0|G|2482
1KQS|1|0|A|2483
1KQS|1|0|U|2484
1KQS|1|0|A|2485
1KQS|1|0|A|2486
1KQS|1|0|C|2487
1KQS|1|0|A|2488
1KQS|1|0|G|2489
*
1KQS|1|0|C|2533
1KQS|1|0|C|2534
1KQS|1|0|U|2535
1KQS|1|0|C|2536
1KQS|1|0|G|2537
1KQS|1|0|A|2538
1KQS|1|0|U|2539
1KQS|1|0|G|2540
1KQS|1|0|U|2541
*
1KQS|1|0|G|2618
1KQS|1|0|U|2619
1KQS|1|0|U|2620
1KQS|1|0|U|2621
1KQS|1|0|A|2622
1KQS|1|0|G|2623
*
1KQS|1|0|C|2641
1KQS|1|0|G|2642
1KQS|1|0|G|2643
1KQS|1|0|C|2644
1KQS|1|0|U|2645
1KQS|1|0|G|2646

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 3

CCA

Chain 4

CC-Pmn-pcb

Chain A

RIBOSOMAL PROTEIN L2

Chain B

RIBOSOMAL PROTEIN L3

Chain C

RIBOSOMAL PROTEIN L4

Chain K

RIBOSOMAL PROTEIN L15

Chain Q

RIBOSOMAL PROTEIN L22