3D structure

PDB id
1M1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGAUGAAG*CGAAUG*CU*ACAA*UGA
Length
23 nucleotides
Bulged bases
1M1K|1|A|U|46
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1M1K|1|A|U|43
1M1K|1|A|G|44
1M1K|1|A|A|45
1M1K|1|A|U|46
1M1K|1|A|G|47
1M1K|1|A|A|48
1M1K|1|A|A|49
1M1K|1|A|G|50
*
1M1K|1|A|C|111
1M1K|1|A|G|112
1M1K|1|A|A|113
1M1K|1|A|A|114
1M1K|1|A|U|115
1M1K|1|A|G|116
*
1M1K|1|A|C|124
1M1K|1|A|U|125
*
1M1K|1|A|A|129
1M1K|1|A|C|130
1M1K|1|A|A|131
1M1K|1|A|A|132
*
1M1K|1|A|U|146
1M1K|1|A|G|147
1M1K|1|A|A|148

Current chains

Chain A
23S RRNA

Nearby chains

Chain 2
RIBOSOMAL PROTEIN L37E
Chain 3
RIBOSOMAL PROTEIN L39E
Chain N
RIBOSOMAL PROTEIN L15E
Chain T
RIBOSOMAL PROTEIN L23

Coloring options:

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