J5_1M1K_002

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCG*CGUAC*GAG*CC*GU

Length

15 nucleotides

Bulged bases

1M1K|1|A|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M1K|1|A|G|537
1M1K|1|A|C|538
1M1K|1|A|G|539
*
1M1K|1|A|C|617
1M1K|1|A|G|618
1M1K|1|A|U|619
1M1K|1|A|A|620
1M1K|1|A|C|621
*
1M1K|1|A|G|634
1M1K|1|A|A|635
1M1K|1|A|G|636
*
1M1K|1|A|C|1365
1M1K|1|A|C|1366
*
1M1K|1|A|G|2058
1M1K|1|A|U|2059

Current chains

Chain A

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L4

Chain K

RIBOSOMAL PROTEIN L13

Chain M

RIBOSOMAL PROTEIN L15

Chain S

RIBOSOMAL PROTEIN L22

Chain Z

RIBOSOMAL PROTEIN L32E