J5_1M1K_005

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CACAG*CGACAUG*CGC*GGGAG

Length

24 nucleotides

Bulged bases

1M1K|1|A|A|700, 1M1K|1|A|G|745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M1K|1|A|C|658
1M1K|1|A|A|659
1M1K|1|A|A|660
1M1K|1|A|G|661
*
1M1K|1|A|C|685
1M1K|1|A|A|686
1M1K|1|A|C|687
1M1K|1|A|A|688
1M1K|1|A|G|689
*
1M1K|1|A|C|696
1M1K|1|A|G|697
1M1K|1|A|A|698
1M1K|1|A|C|699
1M1K|1|A|A|700
1M1K|1|A|U|701
1M1K|1|A|G|702
*
1M1K|1|A|C|726
1M1K|1|A|G|727
1M1K|1|A|C|728
*
1M1K|1|A|G|743
1M1K|1|A|G|744
1M1K|1|A|G|745
1M1K|1|A|A|746
1M1K|1|A|G|747

Current chains

Chain A

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L4

Chain M

RIBOSOMAL PROTEIN L15

Chain P

RIBOSOMAL PROTEIN L18E