J5_1M1K_008

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CAGAAAA

Length

19 nucleotides

Bulged bases

1M1K|1|A|U|2117, 1M1K|1|A|A|2465, 1M1K|1|A|G|2466, 1M1K|1|A|A|2467, 1M1K|1|A|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M1K|1|A|U|2115
1M1K|1|A|U|2116
1M1K|1|A|U|2117
1M1K|1|A|A|2118
*
1M1K|1|A|U|2276
1M1K|1|A|U|2277
1M1K|1|A|U|2278
1M1K|1|A|G|2279
*
1M1K|1|A|C|2292
1M1K|1|A|G|2293
*
1M1K|1|A|C|2315
1M1K|1|A|G|2316
*
1M1K|1|A|C|2464
1M1K|1|A|A|2465
1M1K|1|A|G|2466
1M1K|1|A|A|2467
1M1K|1|A|A|2468
1M1K|1|A|A|2469
1M1K|1|A|A|2470

Current chains

Chain A

23S RRNA

Nearby chains

Chain 4

RIBOSOMAL PROTEIN L44E

Chain C

RIBOSOMAL PROTEIN L2

Chain M

RIBOSOMAL PROTEIN L15

Chain N

RIBOSOMAL PROTEIN L15E

Chain R

RIBOSOMAL PROTEIN L21E