Loop J5_1N34

3D structure

PDB id: 1N34 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å

Loop

Sequence: CUGG*CUUGGAGGAAGAAG*UGUAAACUCCUGAAC*GGUAAUAG*CGAG
Length: 45 nucleotides
Bulged bases: 1N34|1|A|A|412
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1N34|1|A|C|36
1N34|1|A|U|37
1N34|1|A|G|38
1N34|1|A|G|39
*
1N34|1|A|C|403
1N34|1|A|U|404
1N34|1|A|U|405
1N34|1|A|G|406
1N34|1|A|G|407
1N34|1|A|A|408
1N34|1|A|G|409
1N34|1|A|G|410
1N34|1|A|A|411
1N34|1|A|A|412
1N34|1|A|G|413
1N34|1|A|A|414
1N34|1|A|A|415
1N34|1|A|G|416
*
1N34|1|A|U|427
1N34|1|A|G|428
1N34|1|A|U|429
1N34|1|A|A|430
1N34|1|A|A|431
1N34|1|A|A|432
1N34|1|A|C|433
1N34|1|A|U|434
1N34|1|A|C|435
1N34|1|A|C|436
1N34|1|A|U|437
1N34|1|A|G|438
1N34|1|A|A|439
1N34|1|A|A|440
1N34|1|A|C|442
*
1N34|1|A|G|492
1N34|1|A|G|494
1N34|1|A|U|495
1N34|1|A|A|496
1N34|1|A|A|497
1N34|1|A|U|498
1N34|1|A|A|499
1N34|1|A|G|500
*
1N34|1|A|C|545
1N34|1|A|G|546
1N34|1|A|A|547
1N34|1|A|G|548

Current chains

Chain A: 16S RIBOSOMAL RNA

Nearby chains

Chain D: 30S RIBOSOMAL PROTEIN S4
Chain L: 30S RIBOSOMAL PROTEIN S12

J5_1N34_003