J5_1NJM_003

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCAAUCUCAC*GUC*GC*GUGAAUAGG*CGC

Length

27 nucleotides

Bulged bases

1NJM|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|G|1691
1NJM|1|0|C|1692
1NJM|1|0|A|1693
1NJM|1|0|A|1694
1NJM|1|0|U|1695
1NJM|1|0|C|1696
1NJM|1|0|U|1697
1NJM|1|0|C|1698
1NJM|1|0|A|1699
1NJM|1|0|C|1700
*
1NJM|1|0|G|1722
1NJM|1|0|U|1723
1NJM|1|0|C|1724
*
1NJM|1|0|G|1742
1NJM|1|0|C|1743
*
1NJM|1|0|G|1747
1NJM|1|0|U|1748
1NJM|1|0|G|1749
1NJM|1|0|A|1750
1NJM|1|0|A|1751
1NJM|1|0|U|1752
1NJM|1|0|A|1753
1NJM|1|0|G|1754
1NJM|1|0|G|1755
*
1NJM|1|0|C|1971
1NJM|1|0|G|1972
1NJM|1|0|C|1973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains