Loop J5_1NJM

3D structure

PDB id: 1NJM (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU
Length: 44 nucleotides
Bulged bases: 1NJM|1|0|C|2038, 1NJM|1|0|A|2043, 1NJM|1|0|A|2045, 1NJM|1|0|A|2427, 1NJM|1|0|G|2481, 1NJM|1|0|U|2564, 1NJM|1|0|U|2588, 1NJM|1|0|C|2591, 1NJM|1|0|U|2592, 1NJM|1|0|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1NJM|1|0|A|2037
1NJM|1|0|C|2038
1NJM|1|0|G|2039
1NJM|1|0|A|2040
1NJM|1|0|A|2041
1NJM|1|0|A|2042
1NJM|1|0|A|2043
1NJM|1|0|G|2044
1NJM|1|0|A|2045
1NJM|1|0|C|2046
1NJM|1|0|C|2047
*
1NJM|1|0|G|2425
1NJM|1|0|G|2426
1NJM|1|0|A|2427
1NJM|1|0|U|2428
1NJM|1|0|A|2429
1NJM|1|0|A|2430
1NJM|1|0|C|2431
1NJM|1|0|A|2432
*
1NJM|1|0|U|2479
1NJM|1|0|C|2480
1NJM|1|0|G|2481
1NJM|1|0|A|2482
1NJM|1|0|U|2483
1NJM|1|0|G|2484
1NJM|1|0|U|2485
1NJM|1|0|C|2486
*
1NJM|1|0|G|2561
1NJM|1|0|G|2562
1NJM|1|0|U|2563
1NJM|1|0|U|2564
1NJM|1|0|C|2565
1NJM|1|0|A|2566
1NJM|1|0|G|2567
*
1NJM|1|0|C|2585
1NJM|1|0|G|2586
1NJM|1|0|G|2587
1NJM|1|0|U|2588
1NJM|1|0|C|2589
1NJM|1|0|U|2590
1NJM|1|0|C|2591
1NJM|1|0|U|2592
1NJM|1|0|A|2593
1NJM|1|0|U|2594

Current chains

Chain 0: 23S ribosomal RNA

Nearby chains

Chain 5: tRNA acceptor stem mimic

J5_1NJM_004