J5_1NJN_001

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

1NJN|1|0|U|49, 1NJN|1|0|G|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1NJN_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.3575

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1NJN|1|0|C|46
1NJN|1|0|G|47
1NJN|1|0|A|48
1NJN|1|0|U|49
1NJN|1|0|G|50
1NJN|1|0|A|51
1NJN|1|0|A|52
1NJN|1|0|G|53
*
1NJN|1|0|C|114
1NJN|1|0|G|115
1NJN|1|0|A|116
1NJN|1|0|A|117
1NJN|1|0|U|118
1NJN|1|0|G|119
*
1NJN|1|0|C|128
1NJN|1|0|A|129
*
1NJN|1|0|U|142
1NJN|1|0|A|143
1NJN|1|0|U|144
*
1NJN|1|0|A|153
1NJN|1|0|U|154
1NJN|1|0|G|155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains