J5_1NJN_003

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCAAUCUCAC*GUC*GC*GUGAAUAGG*CGC

Length

27 nucleotides

Bulged bases

1NJN|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|G|1691
1NJN|1|0|C|1692
1NJN|1|0|A|1693
1NJN|1|0|A|1694
1NJN|1|0|U|1695
1NJN|1|0|C|1696
1NJN|1|0|U|1697
1NJN|1|0|C|1698
1NJN|1|0|A|1699
1NJN|1|0|C|1700
*
1NJN|1|0|G|1722
1NJN|1|0|U|1723
1NJN|1|0|C|1724
*
1NJN|1|0|G|1742
1NJN|1|0|C|1743
*
1NJN|1|0|G|1747
1NJN|1|0|U|1748
1NJN|1|0|G|1749
1NJN|1|0|A|1750
1NJN|1|0|A|1751
1NJN|1|0|U|1752
1NJN|1|0|A|1753
1NJN|1|0|G|1754
1NJN|1|0|G|1755
*
1NJN|1|0|C|1971
1NJN|1|0|G|1972
1NJN|1|0|C|1973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains