J5_1NJO_003

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCAAUCUCAC*GUC*GC*GUGAAUAGG*CGC

Length

27 nucleotides

Bulged bases

1NJO|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|G|1691
1NJO|1|0|C|1692
1NJO|1|0|A|1693
1NJO|1|0|A|1694
1NJO|1|0|U|1695
1NJO|1|0|C|1696
1NJO|1|0|U|1697
1NJO|1|0|C|1698
1NJO|1|0|A|1699
1NJO|1|0|C|1700
*
1NJO|1|0|G|1722
1NJO|1|0|U|1723
1NJO|1|0|C|1724
*
1NJO|1|0|G|1742
1NJO|1|0|C|1743
*
1NJO|1|0|G|1747
1NJO|1|0|U|1748
1NJO|1|0|G|1749
1NJO|1|0|A|1750
1NJO|1|0|A|1751
1NJO|1|0|U|1752
1NJO|1|0|A|1753
1NJO|1|0|G|1754
1NJO|1|0|G|1755
*
1NJO|1|0|C|1971
1NJO|1|0|G|1972
1NJO|1|0|C|1973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains