J5_1NJO_004

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU

Length

44 nucleotides

Bulged bases

1NJO|1|0|C|2038, 1NJO|1|0|A|2043, 1NJO|1|0|A|2045, 1NJO|1|0|A|2427, 1NJO|1|0|G|2481, 1NJO|1|0|G|2484, 1NJO|1|0|U|2564, 1NJO|1|0|A|2566, 1NJO|1|0|U|2588, 1NJO|1|0|C|2589, 1NJO|1|0|C|2591, 1NJO|1|0|U|2592, 1NJO|1|0|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|A|2037
1NJO|1|0|C|2038
1NJO|1|0|G|2039
1NJO|1|0|A|2040
1NJO|1|0|A|2041
1NJO|1|0|A|2042
1NJO|1|0|A|2043
1NJO|1|0|G|2044
1NJO|1|0|A|2045
1NJO|1|0|C|2046
1NJO|1|0|C|2047
*
1NJO|1|0|G|2425
1NJO|1|0|G|2426
1NJO|1|0|A|2427
1NJO|1|0|U|2428
1NJO|1|0|A|2429
1NJO|1|0|A|2430
1NJO|1|0|C|2431
1NJO|1|0|A|2432
*
1NJO|1|0|U|2479
1NJO|1|0|C|2480
1NJO|1|0|G|2481
1NJO|1|0|A|2482
1NJO|1|0|U|2483
1NJO|1|0|G|2484
1NJO|1|0|U|2485
1NJO|1|0|C|2486
*
1NJO|1|0|G|2561
1NJO|1|0|G|2562
1NJO|1|0|U|2563
1NJO|1|0|U|2564
1NJO|1|0|C|2565
1NJO|1|0|A|2566
1NJO|1|0|G|2567
*
1NJO|1|0|C|2585
1NJO|1|0|G|2586
1NJO|1|0|G|2587
1NJO|1|0|U|2588
1NJO|1|0|C|2589
1NJO|1|0|U|2590
1NJO|1|0|C|2591
1NJO|1|0|U|2592
1NJO|1|0|A|2593
1NJO|1|0|U|2594

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

RNA ACC(Puromycin)