J5_1NJP_003

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAUCUCAC*GUC*GC*GUGAAUAGG*CGC

Length

27 nucleotides

Bulged bases

1NJP|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|G|1691
1NJP|1|0|C|1692
1NJP|1|0|A|1693
1NJP|1|0|A|1694
1NJP|1|0|U|1695
1NJP|1|0|C|1696
1NJP|1|0|U|1697
1NJP|1|0|C|1698
1NJP|1|0|A|1699
1NJP|1|0|C|1700
*
1NJP|1|0|G|1722
1NJP|1|0|U|1723
1NJP|1|0|C|1724
*
1NJP|1|0|G|1742
1NJP|1|0|C|1743
*
1NJP|1|0|G|1747
1NJP|1|0|U|1748
1NJP|1|0|G|1749
1NJP|1|0|A|1750
1NJP|1|0|A|1751
1NJP|1|0|U|1752
1NJP|1|0|A|1753
1NJP|1|0|G|1754
1NJP|1|0|G|1755
*
1NJP|1|0|C|1971
1NJP|1|0|G|1972
1NJP|1|0|C|1973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains