J5_1OND_004

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAUCUCACC*GGUC*GC*GUGAAUAGG*CGC

Length

29 nucleotides

Bulged bases

1OND|1|0|G|1749, 1OND|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|G|1691
1OND|1|0|C|1692
1OND|1|0|A|1693
1OND|1|0|A|1694
1OND|1|0|U|1695
1OND|1|0|C|1696
1OND|1|0|U|1697
1OND|1|0|C|1698
1OND|1|0|A|1699
1OND|1|0|C|1700
1OND|1|0|C|1701
*
1OND|1|0|G|1721
1OND|1|0|G|1722
1OND|1|0|U|1723
1OND|1|0|C|1724
*
1OND|1|0|G|1742
1OND|1|0|C|1743
*
1OND|1|0|G|1747
1OND|1|0|U|1748
1OND|1|0|G|1749
1OND|1|0|A|1750
1OND|1|0|A|1751
1OND|1|0|U|1752
1OND|1|0|A|1753
1OND|1|0|G|1754
1OND|1|0|G|1755
*
1OND|1|0|C|1971
1OND|1|0|G|1972
1OND|1|0|C|1973

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains