Loop J5_1OND

3D structure

PDB id: 1OND (explore in PDB, NAKB, or RNA 3D Hub)
Description: THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUCAG*CGGUCUCUAU
Length: 50 nucleotides
Bulged bases: 1OND|1|0|C|2038, 1OND|1|0|A|2045, 1OND|1|0|A|2427, 1OND|1|0|U|2428, 1OND|1|0|G|2484, 1OND|1|0|U|2588, 1OND|1|0|C|2589, 1OND|1|0|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1OND|1|0|A|2037
1OND|1|0|C|2038
1OND|1|0|G|2039
1OND|1|0|A|2040
1OND|1|0|A|2041
1OND|1|0|A|2042
1OND|1|0|A|2043
1OND|1|0|G|2044
1OND|1|0|A|2045
1OND|1|0|C|2046
1OND|1|0|C|2047
*
1OND|1|0|G|2425
1OND|1|0|G|2426
1OND|1|0|A|2427
1OND|1|0|U|2428
1OND|1|0|A|2429
1OND|1|0|A|2430
1OND|1|0|C|2431
1OND|1|0|A|2432
1OND|1|0|G|2433
1OND|1|0|G|2434
*
1OND|1|0|C|2475
1OND|1|0|A|2476
1OND|1|0|C|2477
1OND|1|0|C|2478
1OND|1|0|U|2479
1OND|1|0|C|2480
1OND|1|0|G|2481
1OND|1|0|A|2482
1OND|1|0|U|2483
1OND|1|0|G|2484
1OND|1|0|U|2485
1OND|1|0|C|2486
*
1OND|1|0|G|2561
1OND|1|0|G|2562
1OND|1|0|U|2563
1OND|1|0|U|2564
1OND|1|0|C|2565
1OND|1|0|A|2566
1OND|1|0|G|2567
*
1OND|1|0|C|2585
1OND|1|0|G|2586
1OND|1|0|G|2587
1OND|1|0|U|2588
1OND|1|0|C|2589
1OND|1|0|U|2590
1OND|1|0|C|2591
1OND|1|0|U|2592
1OND|1|0|A|2593
1OND|1|0|U|2594

Current chains

Chain 0: 23S RIBOSOMAL RNA

Nearby chains

Chain Z: 50S ribosomal protein L32

J5_1OND_005