J5_1OND_006

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

1OND|1|0|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1OND_006 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.1788

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1OND|1|0|C|593
1OND|1|0|G|594
1OND|1|0|A|595
1OND|1|0|C|596
1OND|1|0|U|597
1OND|1|0|U|598
*
1OND|1|0|A|681
1OND|1|0|G|682
1OND|1|0|A|683
1OND|1|0|C|684
*
1OND|1|0|G|822
1OND|1|0|U|823
1OND|1|0|U|824
1OND|1|0|C|825
*
1OND|1|0|G|1209
1OND|1|0|C|1210
*
1OND|1|0|G|1263
1OND|1|0|C|1264
1OND|1|0|G|1265
1OND|1|0|G|1266
1OND|1|0|A|1267
1OND|1|0|U|1268
1OND|1|0|G|1269

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains