J5_1Q7Y_007

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

1Q7Y|1|A|A|2483, 1Q7Y|1|A|U|2484, 1Q7Y|1|A|C|2644, 1Q7Y|1|A|U|2645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Q7Y|1|A|C|2098
1Q7Y|1|A|G|2099
1Q7Y|1|A|A|2100
1Q7Y|1|A|A|2101
1Q7Y|1|A|G|2102
1Q7Y|1|A|A|2103
1Q7Y|1|A|C|2104
1Q7Y|1|A|C|2105
*
1Q7Y|1|A|G|2481
1Q7Y|1|A|G|2482
1Q7Y|1|A|A|2483
1Q7Y|1|A|U|2484
1Q7Y|1|A|A|2485
1Q7Y|1|A|A|2486
1Q7Y|1|A|C|2487
1Q7Y|1|A|A|2488
1Q7Y|1|A|G|2489
*
1Q7Y|1|A|C|2533
1Q7Y|1|A|C|2534
1Q7Y|1|A|U|2535
1Q7Y|1|A|C|2536
1Q7Y|1|A|G|2537
1Q7Y|1|A|A|2538
1Q7Y|1|A|U|2539
1Q7Y|1|A|G|2540
1Q7Y|1|A|U|2541
*
1Q7Y|1|A|G|2618
1Q7Y|1|A|U|2619
1Q7Y|1|A|U|2620
1Q7Y|1|A|U|2621
1Q7Y|1|A|A|2622
1Q7Y|1|A|G|2623
*
1Q7Y|1|A|C|2641
1Q7Y|1|A|G|2642
1Q7Y|1|A|G|2643
1Q7Y|1|A|C|2644
1Q7Y|1|A|U|2645
1Q7Y|1|A|G|2646

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 5

CCdA-P-Puromycin

Chain C

50S ribosomal protein L2P

Chain D

50S ribosomal protein L3P

Chain E

50S ribosomal protein L4E

Chain M

50S ribosomal protein L15P

Chain S

50S ribosomal protein L22P