J5_1Q82_007

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

1Q82|1|A|A|2483, 1Q82|1|A|C|2644, 1Q82|1|A|U|2645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Q82|1|A|C|2098
1Q82|1|A|G|2099
1Q82|1|A|A|2100
1Q82|1|A|A|2101
1Q82|1|A|G|2102
1Q82|1|A|A|2103
1Q82|1|A|C|2104
1Q82|1|A|C|2105
*
1Q82|1|A|G|2481
1Q82|1|A|G|2482
1Q82|1|A|A|2483
1Q82|1|A|U|2484
1Q82|1|A|A|2485
1Q82|1|A|A|2486
1Q82|1|A|C|2487
1Q82|1|A|A|2488
1Q82|1|A|G|2489
*
1Q82|1|A|C|2533
1Q82|1|A|C|2534
1Q82|1|A|U|2535
1Q82|1|A|C|2536
1Q82|1|A|G|2537
1Q82|1|A|A|2538
1Q82|1|A|U|2539
1Q82|1|A|G|2540
1Q82|1|A|U|2541
*
1Q82|1|A|G|2618
1Q82|1|A|U|2619
1Q82|1|A|U|2620
1Q82|1|A|U|2621
1Q82|1|A|A|2622
1Q82|1|A|G|2623
*
1Q82|1|A|C|2641
1Q82|1|A|G|2642
1Q82|1|A|G|2643
1Q82|1|A|C|2644
1Q82|1|A|U|2645
1Q82|1|A|G|2646

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 5

CC-puromycin

Chain C

50S ribosomal protein L2P

Chain D

50S ribosomal protein L3P

Chain E

50S ribosomal protein L4E

Chain J

L10 Ribosomal Protein

Chain M

50S ribosomal protein L15P

Chain S

50S ribosomal protein L22P