J5_1QVF_007

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

1QVF|1|0|A|2483, 1QVF|1|0|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1QVF|1|0|C|2098
1QVF|1|0|G|2099
1QVF|1|0|A|2100
1QVF|1|0|A|2101
1QVF|1|0|G|2102
1QVF|1|0|A|2103
1QVF|1|0|C|2104
1QVF|1|0|C|2105
*
1QVF|1|0|G|2481
1QVF|1|0|G|2482
1QVF|1|0|A|2483
1QVF|1|0|U|2484
1QVF|1|0|A|2485
1QVF|1|0|A|2486
1QVF|1|0|C|2487
1QVF|1|0|A|2488
1QVF|1|0|G|2489
*
1QVF|1|0|C|2533
1QVF|1|0|C|2534
1QVF|1|0|U|2535
1QVF|1|0|C|2536
1QVF|1|0|G|2537
1QVF|1|0|A|2538
1QVF|1|0|U|2539
1QVF|1|0|G|2540
1QVF|1|0|U|2541
*
1QVF|1|0|G|2618
1QVF|1|0|U|2619
1QVF|1|0|U|2620
1QVF|1|0|U|2621
1QVF|1|0|A|2622
1QVF|1|0|G|2623
*
1QVF|1|0|C|2641
1QVF|1|0|G|2642
1QVF|1|0|G|2643
1QVF|1|0|C|2644
1QVF|1|0|U|2645
1QVF|1|0|G|2646

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4E

Chain H

L10 Ribosomal Protein

Chain K

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L22P