J5_1QVG_007
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGCUG
- Length
- 40 nucleotides
- Bulged bases
- 1QVG|1|0|A|2483, 1QVG|1|0|G|2540, 1QVG|1|0|U|2541, 1QVG|1|0|C|2644, 1QVG|1|0|U|2645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1QVG|1|0|C|2098
1QVG|1|0|G|2099
1QVG|1|0|A|2100
1QVG|1|0|A|2101
1QVG|1|0|G|2102
1QVG|1|0|A|2103
1QVG|1|0|C|2104
1QVG|1|0|C|2105
*
1QVG|1|0|G|2481
1QVG|1|0|G|2482
1QVG|1|0|A|2483
1QVG|1|0|U|2484
1QVG|1|0|A|2485
1QVG|1|0|A|2486
1QVG|1|0|C|2487
1QVG|1|0|A|2488
1QVG|1|0|G|2489
*
1QVG|1|0|C|2533
1QVG|1|0|C|2534
1QVG|1|0|U|2535
1QVG|1|0|C|2536
1QVG|1|0|G|2537
1QVG|1|0|A|2538
1QVG|1|0|U|2539
1QVG|1|0|G|2540
1QVG|1|0|U|2541
1QVG|1|0|C|2542
*
1QVG|1|0|G|2617
1QVG|1|0|G|2618
1QVG|1|0|U|2619
1QVG|1|0|U|2620
1QVG|1|0|U|2621
1QVG|1|0|A|2622
1QVG|1|0|G|2623
*
1QVG|1|0|C|2641
1QVG|1|0|G|2642
1QVG|1|0|G|2643
1QVG|1|0|C|2644
1QVG|1|0|U|2645
1QVG|1|0|G|2646
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 4
- Oligonucleotide CCA
- Chain 5
- Oligonucleotide CCA
- Chain A
- 50S ribosomal protein L2P
- Chain B
- 50S ribosomal protein L3P
- Chain C
- 50S ribosomal protein L4E
- Chain H
- L10 Ribosomal Protein
- Chain K
- 50S ribosomal protein L15P
- Chain Q
- 50S ribosomal protein L22P
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