J5_1SM1_003

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GCAAUCUCAC*GUC*GC*GUGAAUAGG*CGC

Length

27 nucleotides

Bulged bases

1SM1|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|G|1691
1SM1|1|0|C|1692
1SM1|1|0|A|1693
1SM1|1|0|A|1694
1SM1|1|0|U|1695
1SM1|1|0|C|1696
1SM1|1|0|U|1697
1SM1|1|0|C|1698
1SM1|1|0|A|1699
1SM1|1|0|C|1700
*
1SM1|1|0|G|1722
1SM1|1|0|U|1723
1SM1|1|0|C|1724
*
1SM1|1|0|G|1742
1SM1|1|0|C|1743
*
1SM1|1|0|G|1747
1SM1|1|0|U|1748
1SM1|1|0|G|1749
1SM1|1|0|A|1750
1SM1|1|0|A|1751
1SM1|1|0|U|1752
1SM1|1|0|A|1753
1SM1|1|0|G|1754
1SM1|1|0|G|1755
*
1SM1|1|0|C|1971
1SM1|1|0|G|1972
1SM1|1|0|C|1973

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain I

50S RIBOSOMAL PROTEIN L14

Chain N

50S RIBOSOMAL PROTEIN L19