J5_1SM1_007

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

1SM1|1|0|A|2043, 1SM1|1|0|A|2045, 1SM1|1|0|A|2427, 1SM1|1|0|G|2481, 1SM1|1|0|U|2483, 1SM1|1|0|U|2564, 1SM1|1|0|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|A|2040
1SM1|1|0|A|2041
1SM1|1|0|A|2042
1SM1|1|0|A|2043
1SM1|1|0|G|2044
1SM1|1|0|A|2045
1SM1|1|0|C|2046
1SM1|1|0|C|2047
*
1SM1|1|0|G|2425
1SM1|1|0|G|2426
1SM1|1|0|A|2427
1SM1|1|0|U|2428
1SM1|1|0|A|2429
1SM1|1|0|A|2430
1SM1|1|0|C|2431
1SM1|1|0|A|2432
*
1SM1|1|0|U|2479
1SM1|1|0|C|2480
1SM1|1|0|G|2481
1SM1|1|0|A|2482
1SM1|1|0|U|2483
1SM1|1|0|G|2484
1SM1|1|0|U|2485
1SM1|1|0|C|2486
*
1SM1|1|0|G|2561
1SM1|1|0|G|2562
1SM1|1|0|U|2563
1SM1|1|0|U|2564
1SM1|1|0|C|2565
1SM1|1|0|A|2566
1SM1|1|0|G|2567
*
1SM1|1|0|C|2585
1SM1|1|0|G|2586
1SM1|1|0|G|2587
1SM1|1|0|U|2588
1SM1|1|0|C|2589
1SM1|1|0|U|2590

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 5

QUINUPRISTIN

Chain A

50S RIBOSOMAL PROTEIN L2

Chain B

50S RIBOSOMAL PROTEIN L3

Chain C

50S RIBOSOMAL PROTEIN L4

Chain Z

50S RIBOSOMAL PROTEIN L32