J5_1VQ8_007
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGACC*GGAUAACA*UCGAUGU*G(UR3)U(PSU)AG*CGGCUG
- Length
- 35 nucleotides
- Bulged bases
- 1VQ8|1|0|A|2103, 1VQ8|1|0|A|2483, 1VQ8|1|0|U|2539, 1VQ8|1|0|G|2540, 1VQ8|1|0|C|2644, 1VQ8|1|0|U|2645
- QA status
- Modified nucleotides: UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VQ8|1|0|C|2098
1VQ8|1|0|G|2099
1VQ8|1|0|A|2100
1VQ8|1|0|A|2101
1VQ8|1|0|G|2102
1VQ8|1|0|A|2103
1VQ8|1|0|C|2104
1VQ8|1|0|C|2105
*
1VQ8|1|0|G|2481
1VQ8|1|0|G|2482
1VQ8|1|0|A|2483
1VQ8|1|0|U|2484
1VQ8|1|0|A|2485
1VQ8|1|0|A|2486
1VQ8|1|0|C|2487
1VQ8|1|0|A|2488
*
1VQ8|1|0|U|2535
1VQ8|1|0|C|2536
1VQ8|1|0|G|2537
1VQ8|1|0|A|2538
1VQ8|1|0|U|2539
1VQ8|1|0|G|2540
1VQ8|1|0|U|2541
*
1VQ8|1|0|G|2618
1VQ8|1|0|UR3|2619
1VQ8|1|0|U|2620
1VQ8|1|0|PSU|2621
1VQ8|1|0|A|2622
1VQ8|1|0|G|2623
*
1VQ8|1|0|C|2641
1VQ8|1|0|G|2642
1VQ8|1|0|G|2643
1VQ8|1|0|C|2644
1VQ8|1|0|U|2645
1VQ8|1|0|G|2646
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 4
- 5'-R(*CP*CP*(DA)*(PHE)*(ACA))-3'
- Chain A
- 50S ribosomal protein L2P
- Chain B
- 50S ribosomal protein L3P
- Chain C
- 50S ribosomal protein L4E
- Chain L
- 50S ribosomal protein L15P
- Chain R
- 50S ribosomal protein L22P
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