J5_1VVJ_004

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

1VVJ|1|RA|U|271|||C, 1VVJ|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VVJ|1|RA|C|268
1VVJ|1|RA|U|269
1VVJ|1|RA|A|270
1VVJ|1|RA|A|270|||A
1VVJ|1|RA|A|270|||B
1VVJ|1|RA|C|270|||C
*
1VVJ|1|RA|G|270|||W
1VVJ|1|RA|G|270|||X
1VVJ|1|RA|G|270|||Y
1VVJ|1|RA|U|270|||Z
1VVJ|1|RA|C|271|||A
1VVJ|1|RA|G|271|||B
1VVJ|1|RA|U|271|||C
1VVJ|1|RA|G|271
*
1VVJ|1|RA|C|366
1VVJ|1|RA|G|370
1VVJ|1|RA|A|371
1VVJ|1|RA|G|372
1VVJ|1|RA|U|373
1VVJ|1|RA|A|374
1VVJ|1|RA|C|375
*
1VVJ|1|RA|G|399
1VVJ|1|RA|G|400
1VVJ|1|RA|A|401
1VVJ|1|RA|A|402
1VVJ|1|RA|U|403
1VVJ|1|RA|C|404
1VVJ|1|RA|U|405
1VVJ|1|RA|G|406
*
1VVJ|1|RA|U|421
1VVJ|1|RA|A|422
1VVJ|1|RA|A|423
1VVJ|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9