3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
CGAG*CGUAG*CGAG*CGCAAGC*GCAAAG
Length
26 nucleotides
Bulged bases
1VVJ|1|RA|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VVJ|1|RA|C|601
1VVJ|1|RA|G|602
1VVJ|1|RA|A|603
1VVJ|1|RA|G|604
*
1VVJ|1|RA|C|624
1VVJ|1|RA|G|625
1VVJ|1|RA|U|626
1VVJ|1|RA|A|627
1VVJ|1|RA|G|628
*
1VVJ|1|RA|C|635
1VVJ|1|RA|G|636
1VVJ|1|RA|A|637
1VVJ|1|RA|G|638
*
1VVJ|1|RA|C|650
1VVJ|1|RA|G|651
1VVJ|1|RA|C|652
1VVJ|1|RA|A|653
1VVJ|1|RA|A|654
1VVJ|1|RA|G|654|||A
1VVJ|1|RA|C|654|||B
*
1VVJ|1|RA|G|654|||S
1VVJ|1|RA|C|654|||T
1VVJ|1|RA|A|654|||U
1VVJ|1|RA|A|654|||V
1VVJ|1|RA|A|655
1VVJ|1|RA|G|656

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R8
tRNA acceptor end mimic
Chain RF
50S ribosomal protein L4
Chain RP
50S ribosomal protein L15

Coloring options:

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