J5_1VVJ_018
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 1VVJ|1|YA|G|1758, 1VVJ|1|YA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VVJ_018 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0885
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VVJ|1|YA|G|1674
1VVJ|1|YA|C|1675
1VVJ|1|YA|A|1676
1VVJ|1|YA|A|1677
1VVJ|1|YA|G|1678
1VVJ|1|YA|U|1679
1VVJ|1|YA|U|1680
1VVJ|1|YA|G|1681
1VVJ|1|YA|G|1682
*
1VVJ|1|YA|U|1706
1VVJ|1|YA|G|1707
*
1VVJ|1|YA|C|1751
1VVJ|1|YA|C|1752
*
1VVJ|1|YA|G|1756
1VVJ|1|YA|U|1757
1VVJ|1|YA|G|1758
1VVJ|1|YA|A|1759
1VVJ|1|YA|A|1760
1VVJ|1|YA|C|1761
1VVJ|1|YA|A|1762
1VVJ|1|YA|G|1763
1VVJ|1|YA|G|1764
*
1VVJ|1|YA|C|1988
1VVJ|1|YA|G|1989
1VVJ|1|YA|C|1990
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YE
- 50S ribosomal protein L3
- Chain YO
- 50S ribosomal protein L14
- Chain YT
- 50S ribosomal protein L19
Coloring options: