J5_1VVJ_019
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 1VVJ|1|YA|A|2062, 1VVJ|1|YA|A|2448, 1VVJ|1|YA|U|2449, 1VVJ|1|YA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VVJ|1|YA|A|2057
1VVJ|1|YA|A|2058
1VVJ|1|YA|A|2059
1VVJ|1|YA|A|2060
1VVJ|1|YA|G|2061
1VVJ|1|YA|A|2062
1VVJ|1|YA|C|2063
1VVJ|1|YA|C|2064
*
1VVJ|1|YA|G|2446
1VVJ|1|YA|G|2447
1VVJ|1|YA|A|2448
1VVJ|1|YA|U|2449
1VVJ|1|YA|A|2450
1VVJ|1|YA|A|2451
1VVJ|1|YA|C|2452
1VVJ|1|YA|A|2453
*
1VVJ|1|YA|U|2500
1VVJ|1|YA|C|2501
1VVJ|1|YA|G|2502
1VVJ|1|YA|A|2503
1VVJ|1|YA|U|2504
1VVJ|1|YA|G|2505
1VVJ|1|YA|U|2506
1VVJ|1|YA|C|2507
*
1VVJ|1|YA|G|2582
1VVJ|1|YA|G|2583
1VVJ|1|YA|U|2584
1VVJ|1|YA|U|2585
1VVJ|1|YA|C|2586
1VVJ|1|YA|A|2587
1VVJ|1|YA|G|2588
*
1VVJ|1|YA|C|2606
1VVJ|1|YA|G|2607
1VVJ|1|YA|G|2608
1VVJ|1|YA|U|2609
1VVJ|1|YA|C|2610
1VVJ|1|YA|U|2611
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XV
- Transfer RNA; tRNA
- Chain Y0
- 50S ribosomal protein L27
- Chain Y5
- 50S ribosomal protein L33
- Chain YD
- 50S ribosomal protein L2
- Chain YE
- 50S ribosomal protein L3
- Chain YF
- 50S ribosomal protein L4
- Chain YW
- 50S ribosomal protein L22
- Chain Z8
- RNA (5'-R(*CP*CP*(PPU))-3')
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