J5_1VX3_001

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAGCG*CGUACG*CGGAGUCG*CAAAGCG*UAAG

Length

31 nucleotides

Bulged bases

1VX3|1|5|G|156, 1VX3|1|5|C|159, 1VX3|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|111
1VX3|1|5|C|112
1VX3|1|5|A|113
1VX3|1|5|G|114
1VX3|1|5|C|115
1VX3|1|5|G|116
*
1VX3|1|5|C|155
1VX3|1|5|G|156
1VX3|1|5|U|157
1VX3|1|5|A|158
1VX3|1|5|C|159
1VX3|1|5|G|160
*
1VX3|1|5|C|276
1VX3|1|5|G|277
1VX3|1|5|G|278
1VX3|1|5|A|279
1VX3|1|5|G|280
1VX3|1|5|U|281
1VX3|1|5|C|282
1VX3|1|5|G|283
*
1VX3|1|5|C|304
1VX3|1|5|A|305
1VX3|1|5|A|306
1VX3|1|5|A|307
1VX3|1|5|G|308
1VX3|1|5|C|309
1VX3|1|5|G|310
*
1VX3|1|5|U|327
1VX3|1|5|A|328
1VX3|1|5|A|329
1VX3|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains