J5_1VX3_002
3D structure
- PDB id
- 1VX3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAGGAGUC*GGAC*GUUCC*GGCCGCUGC*GCAGGUGCAGAUCUU
- Length
- 41 nucleotides
- Bulged bases
- 1VX3|1|5|C|2289, 1VX3|1|5|G|2343, 1VX3|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VX3|1|5|A|1333
1VX3|1|5|A|1334
1VX3|1|5|G|1335
1VX3|1|5|G|1336
1VX3|1|5|A|1337
1VX3|1|5|G|1338
1VX3|1|5|U|1339
1VX3|1|5|C|1340
*
1VX3|1|5|G|1516
1VX3|1|5|G|1517
1VX3|1|5|A|1518
1VX3|1|5|C|1519
*
1VX3|1|5|G|1658
1VX3|1|5|U|1659
1VX3|1|5|U|1660
1VX3|1|5|C|1661
1VX3|1|5|C|1662
*
1VX3|1|5|G|2287
1VX3|1|5|G|2288
1VX3|1|5|C|2289
1VX3|1|5|C|2290
1VX3|1|5|G|2291
1VX3|1|5|C|2292
1VX3|1|5|U|2293
1VX3|1|5|G|2294
1VX3|1|5|C|2295
*
1VX3|1|5|G|2339
1VX3|1|5|C|2340
1VX3|1|5|A|2341
1VX3|1|5|G|2342
1VX3|1|5|G|2343
1VX3|1|5|U|2344
1VX3|1|5|G|2345
1VX3|1|5|C|2346
1VX3|1|5|A|2347
1VX3|1|5|G|2348
1VX3|1|5|A|2349
1VX3|1|5|U|2350
1VX3|1|5|C|2351
1VX3|1|5|U|2352
1VX3|1|5|U|2353
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: