J5_1VX3_003

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAG*CGCAAUGAAGGUGAAG*CGAG*CGGCC*GAGCACGAG

Length

38 nucleotides

Bulged bases

1VX3|1|5|A|1387, 1VX3|1|5|A|1497, 1VX3|1|5|C|1501, 1VX3|1|5|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|1352
1VX3|1|5|G|1353
1VX3|1|5|A|1354
1VX3|1|5|G|1355
*
1VX3|1|5|C|1384
1VX3|1|5|G|1385
1VX3|1|5|C|1386
1VX3|1|5|A|1387
1VX3|1|5|A|1388
1VX3|1|5|U|1389
1VX3|1|5|G|1390
1VX3|1|5|A|1391
1VX3|1|5|A|1392
1VX3|1|5|G|1393
1VX3|1|5|G|1394
1VX3|1|5|U|1395
1VX3|1|5|G|1396
1VX3|1|5|A|1397
1VX3|1|5|A|1398
1VX3|1|5|G|1399
*
1VX3|1|5|C|1418
1VX3|1|5|G|1419
1VX3|1|5|A|1420
1VX3|1|5|G|1421
*
1VX3|1|5|C|1464
1VX3|1|5|G|1465
1VX3|1|5|G|1466
1VX3|1|5|C|1467
1VX3|1|5|C|1468
*
1VX3|1|5|G|1496
1VX3|1|5|A|1497
1VX3|1|5|G|1498
1VX3|1|5|C|1499
1VX3|1|5|A|1500
1VX3|1|5|C|1501
1VX3|1|5|G|1502
1VX3|1|5|A|1503
1VX3|1|5|G|1504

Current chains

Chain 5

28S ribosomal RNA

Nearby chains