J5_1VX3_004

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAGCCGG*UGGCU*AACUG*CGGACCAGG*CAC

Length

31 nucleotides

Bulged bases

1VX3|1|5|G|3620, 1VX3|1|5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|2855
1VX3|1|5|C|2856
1VX3|1|5|A|2857
1VX3|1|5|A|2858
1VX3|1|5|G|2859
1VX3|1|5|C|2860
1VX3|1|5|C|2861
1VX3|1|5|G|2862
1VX3|1|5|G|2863
*
1VX3|1|5|U|2887
1VX3|1|5|G|2888
1VX3|1|5|G|2889
1VX3|1|5|C|2890
1VX3|1|5|U|2891
*
1VX3|1|5|A|3610
1VX3|1|5|A|3611
1VX3|1|5|C|3612
1VX3|1|5|U|3613
1VX3|1|5|G|3614
*
1VX3|1|5|C|3618
1VX3|1|5|G|3619
1VX3|1|5|G|3620
1VX3|1|5|A|3621
1VX3|1|5|C|3622
1VX3|1|5|C|3623
1VX3|1|5|A|3624
1VX3|1|5|G|3625
1VX3|1|5|G|3626
*
1VX3|1|5|C|3835
1VX3|1|5|A|3836
1VX3|1|5|C|3837

Current chains

Chain 5

28S ribosomal RNA

Nearby chains