J5_1VX3_005

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAAGACCC*GGGAUAACUGGCUUGUG*UUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU

Length

58 nucleotides

Bulged bases

1VX3|1|5|A|3908, 1VX3|1|5|A|4394, 1VX3|1|5|U|4436, 1VX3|1|5|U|4437, 1VX3|1|5|U|4450, 1VX3|1|5|G|4451, 1VX3|1|5|U|4452, 1VX3|1|5|U|4531, 1VX3|1|5|U|4555, 1VX3|1|5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|A|3903
1VX3|1|5|G|3904
1VX3|1|5|A|3905
1VX3|1|5|A|3906
1VX3|1|5|G|3907
1VX3|1|5|A|3908
1VX3|1|5|C|3909
1VX3|1|5|C|3910
1VX3|1|5|C|3911
*
1VX3|1|5|G|4391
1VX3|1|5|G|4392
1VX3|1|5|G|4393
1VX3|1|5|A|4394
1VX3|1|5|U|4395
1VX3|1|5|A|4396
1VX3|1|5|A|4397
1VX3|1|5|C|4398
1VX3|1|5|U|4399
1VX3|1|5|G|4400
1VX3|1|5|G|4401
1VX3|1|5|C|4402
1VX3|1|5|U|4403
1VX3|1|5|U|4404
1VX3|1|5|G|4405
1VX3|1|5|U|4406
1VX3|1|5|G|4407
*
1VX3|1|5|U|4435
1VX3|1|5|U|4436
1VX3|1|5|U|4437
1VX3|1|5|U|4438
1VX3|1|5|U|4439
1VX3|1|5|G|4440
1VX3|1|5|A|4441
1VX3|1|5|U|4442
1VX3|1|5|C|4443
1VX3|1|5|C|4444
1VX3|1|5|U|4445
1VX3|1|5|U|4446
1VX3|1|5|C|4447
1VX3|1|5|G|4448
1VX3|1|5|A|4449
1VX3|1|5|U|4450
1VX3|1|5|G|4451
1VX3|1|5|U|4452
1VX3|1|5|C|4453
*
1VX3|1|5|G|4528
1VX3|1|5|G|4529
1VX3|1|5|U|4530
1VX3|1|5|U|4531
1VX3|1|5|U|4532
1VX3|1|5|A|4533
1VX3|1|5|G|4534
*
1VX3|1|5|U|4552
1VX3|1|5|A|4553
1VX3|1|5|G|4554
1VX3|1|5|U|4555
1VX3|1|5|U|4556
1VX3|1|5|U|4557

Current chains

Chain 5

28S ribosomal RNA

Nearby chains