J5_1VY4_016

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

1VY4|1|DA|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY4|1|DA|C|601
1VY4|1|DA|G|602
1VY4|1|DA|A|603
1VY4|1|DA|G|604
*
1VY4|1|DA|C|624
1VY4|1|DA|G|625
1VY4|1|DA|U|626
1VY4|1|DA|A|627
1VY4|1|DA|G|628
*
1VY4|1|DA|C|635
1VY4|1|DA|G|636
1VY4|1|DA|A|637
1VY4|1|DA|G|638
*
1VY4|1|DA|C|650
1VY4|1|DA|G|651
1VY4|1|DA|C|652
1VY4|1|DA|A|652|||A
1VY4|1|DA|A|652|||B
1VY4|1|DA|G|652|||C
*
1VY4|1|DA|C|652|||V
1VY4|1|DA|A|653
1VY4|1|DA|A|654
1VY4|1|DA|A|655
1VY4|1|DA|G|656

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15