J5_1VY4_017
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 1VY4|1|DA|G|1758, 1VY4|1|DA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VY4_017 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.063
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VY4|1|DA|G|1674
1VY4|1|DA|C|1675
1VY4|1|DA|A|1676
1VY4|1|DA|A|1677
1VY4|1|DA|G|1678
1VY4|1|DA|U|1679
1VY4|1|DA|U|1680
1VY4|1|DA|G|1681
1VY4|1|DA|G|1682
*
1VY4|1|DA|U|1706
1VY4|1|DA|G|1707
*
1VY4|1|DA|C|1751
1VY4|1|DA|C|1752
*
1VY4|1|DA|G|1756
1VY4|1|DA|U|1757
1VY4|1|DA|G|1758
1VY4|1|DA|A|1759
1VY4|1|DA|A|1760
1VY4|1|DA|C|1761
1VY4|1|DA|A|1762
1VY4|1|DA|G|1763
1VY4|1|DA|G|1764
*
1VY4|1|DA|C|1988
1VY4|1|DA|G|1989
1VY4|1|DA|C|1990
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DE
- 50S ribosomal protein L3
- Chain DO
- 50S ribosomal protein L14
- Chain DT
- 50S ribosomal protein L19
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