J5_1VY5_013

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

1VY5|1|DA|U|272|||A, 1VY5|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY5|1|DA|C|268
1VY5|1|DA|U|269
1VY5|1|DA|A|270
1VY5|1|DA|A|271
1VY5|1|DA|A|271|||A
1VY5|1|DA|C|271|||B
*
1VY5|1|DA|G|271|||V
1VY5|1|DA|G|271|||W
1VY5|1|DA|G|271|||X
1VY5|1|DA|U|271|||Y
1VY5|1|DA|C|271|||Z
1VY5|1|DA|G|272
1VY5|1|DA|U|272|||A
1VY5|1|DA|G|272|||B
*
1VY5|1|DA|C|366
1VY5|1|DA|G|370
1VY5|1|DA|A|371
1VY5|1|DA|G|372
1VY5|1|DA|U|373
1VY5|1|DA|A|374
1VY5|1|DA|C|375
*
1VY5|1|DA|G|399
1VY5|1|DA|G|400
1VY5|1|DA|A|401
1VY5|1|DA|A|402
1VY5|1|DA|U|403
1VY5|1|DA|C|404
1VY5|1|DA|U|405
1VY5|1|DA|G|406
*
1VY5|1|DA|U|421
1VY5|1|DA|A|422
1VY5|1|DA|A|423
1VY5|1|DA|G|424

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9