J5_1VY6_008
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 1VY6|1|BA|A|2062, 1VY6|1|BA|A|2448, 1VY6|1|BA|U|2449, 1VY6|1|BA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VY6|1|BA|A|2057
1VY6|1|BA|A|2058
1VY6|1|BA|A|2059
1VY6|1|BA|A|2060
1VY6|1|BA|G|2061
1VY6|1|BA|A|2062
1VY6|1|BA|C|2063
1VY6|1|BA|C|2064
*
1VY6|1|BA|G|2446
1VY6|1|BA|G|2447
1VY6|1|BA|A|2448
1VY6|1|BA|U|2449
1VY6|1|BA|A|2450
1VY6|1|BA|A|2451
1VY6|1|BA|C|2452
1VY6|1|BA|A|2453
*
1VY6|1|BA|U|2500
1VY6|1|BA|C|2501
1VY6|1|BA|G|2502
1VY6|1|BA|A|2503
1VY6|1|BA|U|2504
1VY6|1|BA|G|2505
1VY6|1|BA|U|2506
1VY6|1|BA|C|2507
*
1VY6|1|BA|G|2582
1VY6|1|BA|G|2583
1VY6|1|BA|U|2584
1VY6|1|BA|U|2585
1VY6|1|BA|C|2586
1VY6|1|BA|A|2587
1VY6|1|BA|G|2588
*
1VY6|1|BA|C|2606
1VY6|1|BA|G|2607
1VY6|1|BA|G|2608
1VY6|1|BA|U|2609
1VY6|1|BA|C|2610
1VY6|1|BA|U|2611
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AW
- Cytidine-Puromycin
- Chain AX
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain B5
- 50S ribosomal protein L32
- Chain BD
- 50S ribosomal protein L2
- Chain BE
- 50S ribosomal protein L3
- Chain BF
- 50S ribosomal protein L4
- Chain BP
- 50S ribosomal protein L15
- Chain BQ
- 50S ribosomal protein L16
- Chain BW
- 50S ribosomal protein L22
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