J5_1VY6_016

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|DA|C|601
1VY6|1|DA|G|602
1VY6|1|DA|A|603
1VY6|1|DA|G|604
*
1VY6|1|DA|C|624
1VY6|1|DA|G|625
1VY6|1|DA|U|626
1VY6|1|DA|A|627
1VY6|1|DA|G|628
*
1VY6|1|DA|C|635
1VY6|1|DA|G|636
1VY6|1|DA|A|637
1VY6|1|DA|G|638
*
1VY6|1|DA|C|650
1VY6|1|DA|G|651
1VY6|1|DA|C|652
1VY6|1|DA|A|652|||A
1VY6|1|DA|A|652|||B
1VY6|1|DA|G|652|||C
*
1VY6|1|DA|C|652|||V
1VY6|1|DA|A|653
1VY6|1|DA|A|654
1VY6|1|DA|A|655
1VY6|1|DA|G|656

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15