J5_1W2B_007
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG
- Length
- 38 nucleotides
- Bulged bases
- 1W2B|1|0|A|2483, 1W2B|1|0|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1W2B|1|0|C|2098
1W2B|1|0|G|2099
1W2B|1|0|A|2100
1W2B|1|0|A|2101
1W2B|1|0|G|2102
1W2B|1|0|A|2103
1W2B|1|0|C|2104
1W2B|1|0|C|2105
*
1W2B|1|0|G|2481
1W2B|1|0|G|2482
1W2B|1|0|A|2483
1W2B|1|0|U|2484
1W2B|1|0|A|2485
1W2B|1|0|A|2486
1W2B|1|0|C|2487
1W2B|1|0|A|2488
1W2B|1|0|G|2489
*
1W2B|1|0|C|2533
1W2B|1|0|C|2534
1W2B|1|0|U|2535
1W2B|1|0|C|2536
1W2B|1|0|G|2537
1W2B|1|0|A|2538
1W2B|1|0|U|2539
1W2B|1|0|G|2540
1W2B|1|0|U|2541
*
1W2B|1|0|G|2618
1W2B|1|0|U|2619
1W2B|1|0|U|2620
1W2B|1|0|U|2621
1W2B|1|0|A|2622
1W2B|1|0|G|2623
*
1W2B|1|0|C|2641
1W2B|1|0|G|2642
1W2B|1|0|G|2643
1W2B|1|0|C|2644
1W2B|1|0|U|2645
1W2B|1|0|G|2646
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain A
- 50S RIBOSOMAL PROTEIN L2P
- Chain B
- 50S RIBOSOMAL PROTEIN L3P
- Chain C
- 50S RIBOSOMAL PROTEIN L4P
- Chain K
- 50S RIBOSOMAL PROTEIN L15P
- Chain Q
- 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22
Coloring options: