J5_1Y69_002

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

1Y69|1|0|U|824, 1Y69|1|0|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1Y69_002 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.153

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1Y69|1|0|C|593
1Y69|1|0|G|594
1Y69|1|0|A|595
1Y69|1|0|C|596
1Y69|1|0|U|597
1Y69|1|0|U|598
*
1Y69|1|0|A|681
1Y69|1|0|G|682
1Y69|1|0|A|683
1Y69|1|0|C|684
*
1Y69|1|0|G|822
1Y69|1|0|U|823
1Y69|1|0|U|824
1Y69|1|0|C|825
*
1Y69|1|0|G|1209
1Y69|1|0|C|1210
*
1Y69|1|0|G|1263
1Y69|1|0|C|1264
1Y69|1|0|G|1265
1Y69|1|0|G|1266
1Y69|1|0|A|1267
1Y69|1|0|U|1268
1Y69|1|0|G|1269

Current chains

Chain 0

23S ribosomal RNA

Nearby chains