J5_1Y69_003

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGAACUUUGCAAUCUCAC*GUC*GC*GUGAAUAGG*CGCUGUC

Length

39 nucleotides

Bulged bases

1Y69|1|0|G|1749, 1Y69|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|G|1683
1Y69|1|0|G|1684
1Y69|1|0|A|1685
1Y69|1|0|A|1686
1Y69|1|0|C|1687
1Y69|1|0|U|1688
1Y69|1|0|U|1689
1Y69|1|0|U|1690
1Y69|1|0|G|1691
1Y69|1|0|C|1692
1Y69|1|0|A|1693
1Y69|1|0|A|1694
1Y69|1|0|U|1695
1Y69|1|0|C|1696
1Y69|1|0|U|1697
1Y69|1|0|C|1698
1Y69|1|0|A|1699
1Y69|1|0|C|1700
*
1Y69|1|0|G|1722
1Y69|1|0|U|1723
1Y69|1|0|C|1724
*
1Y69|1|0|G|1742
1Y69|1|0|C|1743
*
1Y69|1|0|G|1747
1Y69|1|0|U|1748
1Y69|1|0|G|1749
1Y69|1|0|A|1750
1Y69|1|0|A|1751
1Y69|1|0|U|1752
1Y69|1|0|A|1753
1Y69|1|0|G|1754
1Y69|1|0|G|1755
*
1Y69|1|0|C|1971
1Y69|1|0|G|1972
1Y69|1|0|C|1973
1Y69|1|0|U|1974
1Y69|1|0|G|1975
1Y69|1|0|U|1976
1Y69|1|0|C|1977

Current chains

Chain 0

23S ribosomal RNA

Nearby chains