Loop J5_1Y69

3D structure

PDB id: 1Y69 (explore in PDB, NAKB, or RNA 3D Hub)
Description: RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.33 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUCAG*CGGUCUCUAU
Length: 50 nucleotides
Bulged bases: 1Y69|1|0|C|2038, 1Y69|1|0|A|2045, 1Y69|1|0|A|2427, 1Y69|1|0|U|2428, 1Y69|1|0|G|2484, 1Y69|1|0|U|2564, 1Y69|1|0|U|2588, 1Y69|1|0|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1Y69|1|0|A|2037
1Y69|1|0|C|2038
1Y69|1|0|G|2039
1Y69|1|0|A|2040
1Y69|1|0|A|2041
1Y69|1|0|A|2042
1Y69|1|0|A|2043
1Y69|1|0|G|2044
1Y69|1|0|A|2045
1Y69|1|0|C|2046
1Y69|1|0|C|2047
*
1Y69|1|0|G|2425
1Y69|1|0|G|2426
1Y69|1|0|A|2427
1Y69|1|0|U|2428
1Y69|1|0|A|2429
1Y69|1|0|A|2430
1Y69|1|0|C|2431
1Y69|1|0|A|2432
1Y69|1|0|G|2433
1Y69|1|0|G|2434
*
1Y69|1|0|C|2475
1Y69|1|0|A|2476
1Y69|1|0|C|2477
1Y69|1|0|C|2478
1Y69|1|0|U|2479
1Y69|1|0|C|2480
1Y69|1|0|G|2481
1Y69|1|0|A|2482
1Y69|1|0|U|2483
1Y69|1|0|G|2484
1Y69|1|0|U|2485
1Y69|1|0|C|2486
*
1Y69|1|0|G|2561
1Y69|1|0|G|2562
1Y69|1|0|U|2563
1Y69|1|0|U|2564
1Y69|1|0|C|2565
1Y69|1|0|A|2566
1Y69|1|0|G|2567
*
1Y69|1|0|C|2585
1Y69|1|0|G|2586
1Y69|1|0|G|2587
1Y69|1|0|U|2588
1Y69|1|0|C|2589
1Y69|1|0|U|2590
1Y69|1|0|C|2591
1Y69|1|0|U|2592
1Y69|1|0|A|2593
1Y69|1|0|U|2594

Current chains

Chain 0: 23S ribosomal RNA

Nearby chains

Chain K: 50S ribosomal protein L16

J5_1Y69_005