J5_1Y69_006

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCU

Length

35 nucleotides

Bulged bases

1Y69|1|0|A|2045, 1Y69|1|0|A|2427, 1Y69|1|0|U|2428, 1Y69|1|0|G|2484, 1Y69|1|0|U|2564, 1Y69|1|0|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|A|2040
1Y69|1|0|A|2041
1Y69|1|0|A|2042
1Y69|1|0|A|2043
1Y69|1|0|G|2044
1Y69|1|0|A|2045
1Y69|1|0|C|2046
1Y69|1|0|C|2047
*
1Y69|1|0|G|2425
1Y69|1|0|G|2426
1Y69|1|0|A|2427
1Y69|1|0|U|2428
1Y69|1|0|A|2429
1Y69|1|0|A|2430
1Y69|1|0|C|2431
1Y69|1|0|A|2432
*
1Y69|1|0|U|2479
1Y69|1|0|C|2480
1Y69|1|0|G|2481
1Y69|1|0|A|2482
1Y69|1|0|U|2483
1Y69|1|0|G|2484
1Y69|1|0|U|2485
*
1Y69|1|0|G|2562
1Y69|1|0|U|2563
1Y69|1|0|U|2564
1Y69|1|0|C|2565
1Y69|1|0|A|2566
1Y69|1|0|G|2567
*
1Y69|1|0|C|2585
1Y69|1|0|G|2586
1Y69|1|0|G|2587
1Y69|1|0|U|2588
1Y69|1|0|C|2589
1Y69|1|0|U|2590

Current chains

Chain 0

23S ribosomal RNA

Nearby chains